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SRX2764988: Pathogen panel for WGS validation in public health laboratories
1 ILLUMINA (Illumina MiSeq) run: 2.1M spots, 913.4M bases, 561Mb downloads

Design: Nextera XT, paired-read
Submitted by: California Department of Public Health
Study: Bacterial WGS validation panel
show Abstracthide Abstract
The set represents a typical workflow in the public health microbiological laboratory: 10 Enterobacteriaceae isolates, 5 gram-positive cocci, 5 gram-negative non-fermenting species, 9 Mycobacterium tuberculosis, and 5 miscellaneous bacteria. Raw reads and genome assemblies can be used for validation of sequencing platforms and kits as per CLIA (Clinical Laboratory Improvement Act) requirements for the laboratory developed test (LDT), and for future multi-laboratory comparisons of WGS in public health laboratories.
Sample: CDPH_C55
SAMN05721770 • SRS1663167 • All experiments • All runs
Library:
Name: C55_2
Instrument: Illumina MiSeq
Strategy: WGS
Source: GENOMIC
Selection: RANDOM
Layout: PAIRED
Runs: 1 run, 2.1M spots, 913.4M bases, 561Mb
Run# of Spots# of BasesSizePublished
SRR54815372,090,398913.4M561Mb2017-04-25

ID:
3984601

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